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By running make compile-commands a `compile_commands.json` in the RIOT base directory. With the environment variable `COMPILE_COMMANDS` the path of this file can be changed to a custom location. The `compile_commands.json` will contain the exact compile command, but as additional flag `-I/usr/$(TARGET)/include` is added to work around `clangd` not being able to locate the newlib system headers. The additional includes can be overwritten using the environment variable `COMPILE_COMMANDS_EXTRA_INCLUDES`.